VirtualTam's bookmarks

1. Admixfrog - A HMM to infer ancestry frogments (fragments) from low-coverage, contaminated data.

   2025-05-10
   ethnology genetics probability programming/c programming/c++ programming/python programming/r science statistics

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   • DReichLab/AdmixTools - Tools test whether admixture occurred and more
   • admixr (CRAN)
   • fgvieira/ngsDist - Estimation of pairwise distances under a probabilistic framework
   • ANGSD/NgsRelate - Infer relatedness and other summary statistics for pairs of individuals from low coverage Next Generation Sequencing (NGS)
   • Science Direct - Population dynamics and genetic connectivity in recent chimpanzee history
2. Here Documents - Bash Reference Manual

   2023-09-11
   network/ssh programming/shell/bash

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   The format of here-documents is:

   1[n]<<[-]word
   2        here-document
   3delimiter
   

   If any part of word is quoted, the delimiter is the result of quote removal on word, and the lines in the here-document are not expanded.

   This is useful to write scripts that:

   • write scripts (verbatim)
   • execute a sequence of commands (verbatim) on a remote host
3. Steppy - Python step sequencer

   2019-07-30
   instrument/midi programming/python sequencer

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   • https://github.com/ygravrand/steppy
4. ORCA Sequencer Intro

   2019-05-21
   audio programming/node.js sequencer

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5. Orca: Esoteric Programming Language

   2019-05-21
   command-line instrument/midi programming-language programming/node.js sequencer

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   • https://wiki.xxiivv.com/#orca
   • https://patchstorage.com/platform/orca/
6. Adding 24-bit TrueColor RGB escape sequences to tmux - The Terminal Programmer

   2018-04-24
   color command-line/tmux solarized terminal theme

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   • https://github.com/tmux/tmux/issues/34
   • https://github.com/tmux/tmux/issues/622
   • https://github.com/tmux/tmux/pull/112
   • https://github.com/morhetz/gruvbox/issues/98
7. orsinium/textdistance: Compute distance between sequences. 30+ algorithms, pure python implementation, common interface.

   2018-03-27
   comparison observability/metrics programming/python text word

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8. Algorithmic Composition In Pure Data

   2018-03-01
   audio loop markov multimedia/pure-data random sequencer

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9. Why Do We Use Fibonacci Numbers to Estimate User Stories? - Scrum Inc

   2018-02-24
   agile fibonacci mathematics sequence

   Permalink
   • https://www.rand.org/topics/delphi-method.html
   • https://dl.acm.org/citation.cfm?id=2083397
   • http://www.yakyma.com/2012/05/why-progressive-estimation-scale-is-so.html
   • https://www.quora.com/Why-does-the-Fibonacci-sequence-repeat-in-nature
10. mermaid · Generation of diagrams and flowcharts from text in a similar manner as markdown

    2018-01-04
    chart diagram flowchart programming/javascript sequence software-engineering/uml

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    • https://github.com/knsv/mermaid
11. Synth Bike 3.0

    2017-12-14
    analog bike diy embedded/arduino hack instrument/synthesizer raspberry-pi sequencer

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12. 8 Step Keyboard Sequencer - LOOK MUM NO COMPUTER

    2017-12-14
    diy electronics embedded/arduino instrument/synthesizer sequencer solder

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    • https://www.youtube.com/watch?v=9oGlCfwCoCw
    • https://blog.arduino.cc/2017/11/20/building-an-8-step-keyboard-sequencer-with-arduino/
13. Distributed environments and database migrations

    2017-11-29
    database/migration database/schema distributed-system framework/django linux/container/docker

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    Actors:

    • database server / cluster
    • load-balanced application servers relying on a database schema with migrations
    • reverse proxy

    Issue:

    • managing database schema migrations

    Possible sequence:

    • create the database
    • run a service that executes database schema migrations
    • start application servers
    • start the load-balancer / reverse-proxy

    Resources:

    • https://www.reddit.com/r/docker/comments/2t2pnf/what_are_best_strategies_to_migrate_relational/
    • https://softwareengineering.stackexchange.com/questions/357929/db-migration-strategy-for-docker-containers-in-aws-ecs
    • https://stackoverflow.com/questions/41592091/run-a-database-migration-command-when-deploying-a-docker-container-to-aws
    • https://ltd-keeper.lsst.io/gke-migrations.html
    • https://stackoverflow.com/questions/31715239/docker-compose-database-migrations-and-other-pre-post-scripts
    • https://stackoverflow.com/questions/38089999/docker-compose-rails-best-practice-to-migrate
    • https://stackoverflow.com/questions/37058812/how-best-to-run-one-off-migration-tasks-in-a-kubernetes-cluster
14. IBM developerWorks | UML Basics

    2017-09-27
    class diagram flowchart software-engineering/uml system

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    • Introduction - https://www.ibm.com/developerworks/rational/library/769.html
    • Class diagram - https://www.ibm.com/developerworks/rational/library/content/RationalEdge/sep04/bell/index.html
    • Component diagram - https://www.ibm.com/developerworks/rational/library/dec04/bell/index.html
    • Sequence diagram - https://www.ibm.com/developerworks/rational/library/3101.html
15. Mscgen: A Message Sequence Chart Renderer

    2017-09-19
    diagram documentation/sphinx doxygen software-engineering/uml

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16. uml - Software for Sequence Diagrams? - Stack Overflow

    2017-09-19
    diagram sequence software-engineering/uml

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17. Chatbots with Seq2Seq

    2017-09-06
    bot chat deep-learning machine-learning sequence

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    • https://suriyadeepan.github.io/2016-12-31-practical-seq2seq/
    • https://github.com/suriyadeepan/myshkin
    • http://www.mitsuku.com/
    • https://arxiv.org/abs/1406.1078
    • https://github.com/farizrahman4u/seq2seq
18. AUTOMATONISM - Pure Data virtual modular synthesizer

    2017-08-22
    audio digital-signal-processing filter fx instrument/midi multimedia/pure-data sequencer synthesis user-interface wave

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    • https://automatonism.bandcamp.com/
    • https://vimeo.com/automatonism
    • https://www.automatonism.com/synth-recipes
    • http://www.synthtopia.com/content/2017/04/25/new-open-source-modular-synthesizer-for-pure-data/
19. VisualTracker - An open source modular sequencer with graphical user interface written for Pure Data

    2017-08-18
    event instrument/metronome multimedia/pure-data sequencer

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    • https://www.uni-weimar.de/kunst-und-gestaltung/wiki/PDCON:Conference/VisualTracker_-_modular_pd_environment_for_sequencing_events_on_timeline
    • https://forum.pdpatchrepo.info/topic/3720/visualtracker-request-for-participants
    • https://forum.pdpatchrepo.info/topic/4972/metronome-which-bangs-every-bar-main-subdivision-and-others
20. x0xb0x®: Transistorize the World

    2017-05-03
    analog instrument/drums machine music/rhythm sequencer

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