VirtualTam's bookmarks

1. Admixfrog - A HMM to infer ancestry frogments (fragments) from low-coverage, contaminated data.

   2025-05-10
   ethnology genetics probability programming/c programming/c++ programming/python programming/r science statistics

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   • DReichLab/AdmixTools - Tools test whether admixture occurred and more
   • admixr (CRAN)
   • fgvieira/ngsDist - Estimation of pairwise distances under a probabilistic framework
   • ANGSD/NgsRelate - Infer relatedness and other summary statistics for pairs of individuals from low coverage Next Generation Sequencing (NGS)
   • Science Direct - Population dynamics and genetic connectivity in recent chimpanzee history
2. wirelogd - Logging daemon for Wireguard

   2025-01-04
   network/vpn/wireguard observability/logging programming/go

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   Wirelogd relies on the latest handshake to determine if a peer is active or inactive. While there is trafic the handshake should be renewed every 2 minutes. If there is no trafic handshake is not renewed. Based on this behavior we assume that if there is no new handshake after a while, the client is probably inactive.

3. Andrei N. Ciobanu - My list of challenging software projects some programmers should try

   2024-03-31
   algorithm cellular-automaton data-structure game probability programming-language programming-language/esoteric window-manager/tiling

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4. Go Toolchains

   2023-06-24
   command-line programming/go unix/path

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   • Go 1.21 will (probably) download newer toolchains on demand by default
5. pomegranate - Python probabilistic models

   2017-10-10
   bayesian markov model probability programming/python

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   • https://github.com/jmschrei/pomegranate
6. Introduction to Hidden Markov Models with Python Networkx and Sklearn

   2017-02-23
   markov probability programming/python programming/python/numpy

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7. How would git handle a SHA-1 collision on a blob? - Stack Overflow

   2015-02-14
   algorithm code collision commit cryptography/hash patch review security sha1 source-code-management/gerrit source-code-management/git

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   • https://en.wikipedia.org/wiki/SHA-1
   • http://stackoverflow.com/questions/1867191/probability-of-sha1-collisions
   • http://en.wikipedia.org/wiki/Birthday_problem

   Some thoughts we had while toying with Gerrit, which artificially tracks different commits to group them as "patch sets", by using a Change-Id SHA-1 in the commit message:

   • https://gerrit-review.googlesource.com/Documentation/cmd-hook-commit-msg.html
   • https://gerrit.googlesource.com/git-repo/+/master/hooks/commit-msg